(04-11-2010 09:57 PM)animus Wrote: I wouldn't even get a room in NYC. I'd get one around the Allentown PA area for 2 nights.
I'd just take NJ Transit into Penn Station and take the A/C train to either Columbus Circle or 125th Street and switch to the B/D train.
As for booking rooms I'd look in Bergen, Essex or Hudson Counties at hotels. You'll be plenty close and I can't imagine its all that much more than all the way out in Allentown. Basically you wanna stay near I-80, the Garden State Parkway, the NJ Turnpike/I-95, US 1/US 9, NJ 4, NJ 3, NJ 21, NJ 17, US 46*, I-280 or I-78 in terms of roads and/or a NJ Transit commuter rail station or a major bus station. I wouldn't stay in Hoboken or downtown Jersey City as nearly the same sort of sticker shock would ensue. If its on US 46 and in the following towns don't do it its a 90% chance of being a "roach motel": Elmwood Park, South Hackensack, Little Ferry, Teterboro, Lodi, Saddle Brook, Ridgefield Park
NJ 3 is probably the best corridor to stay on as you can easily and quickly drive from Secaucus or East Rutherford hotels to Secaucus Junction and pay the $5 to park and ride the train into Penn Station. Also might be able to get bus service from some of them directly into the Port Authority Bus Terminal.
If you've never been to Manhattan its actually very easy to navigate north of 14th Street since its a near perfect grid with the only real exceptions being Central Park blocking the cross-streets and Broadway cutting diagonally across Manhattan from 79th Street to about 14th Street (Union Square.) Despite the rumors, sensationalism and older films/TV the subway system is very safe, fairly clean and very efficient and has been so for at least the last 15 years. Also, Harlem and Washington Heights aren't unsafe open drug markets anymore, they're gentrifying much like the rest of Manhattan, Brooklyn and to lesser extents much of Queens and parts of the Bronx.
As for New Year's Eve in Times Square, skip it its horrible. My priorities would be to check out Rockefeller Center, Grand Central Terminal and the Art Museums. Perhaps after that the real touristy stuff, over half of which I've never done having lived here my entire 25 years. If you're traveling with young adults or music types check out the Williamsburg neighborhood in Brooklyn and one of the various bars with live music. Trash Bar is one I can recommend from personal experience.